Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
KIRC | rs811892 | chr16:23627961 | C/G | 6.16E-10 | 502 | 37.47 | 37.68 | 2.43 | KM Plot |
KIRC | rs867624 | chr1:161467837 | A/T | 1.62E-5 | 509 | 37.6 | 37.47 | 18.3 | KM Plot |
KIRC | rs874236 | chr2:67537804 | A/G | 1.77E-7 | 507 | 37.37 | 37.7 | 2.03 | KM Plot |
KIRC | rs880071 | chr16:15842023 | G/A | 4.29E-6 | 508 | 37.33 | 37.93 | 3.67 | KM Plot |
KIRC | rs907629 | chr11:64839697 | G/T | 1.95E-5 | 509 | 36.9 | 42.2 | 5.4 | KM Plot |
KIRC | rs9308808 | chr2:109489616 | A/C | 1.01E-11 | 506 | 37.73 | 26.5 | 2.3 | KM Plot |
KIRC | rs9357252 | chr6:37670377 | A/G | 2.34E-7 | 509 | 37.47 | 36 | 3.37 | KM Plot |
KIRC | rs936427 | chr3:48301074 | A/G | 8.01E-8 | 509 | 19.13 | 37.73 | 37.73 | KM Plot |
KIRC | rs9380699 | chr6:37653641 | C/T | 1.5E-7 | 506 | 37.37 | 39.08 | 3.37 | KM Plot |
KIRC | rs9394451 | chr6:37655781 | T/C | 1.78E-7 | 503 | 37.37 | 35.83 | 3.37 | KM Plot |
KIRC | rs9394452 | chr6:37655800 | T/C | 1.78E-7 | 503 | 37.37 | 35.83 | 3.37 | KM Plot |
KIRC | rs9461219 | chr6:25836927 | C/G | 0.000103 | 509 | 4.1 | 30.3 | 37.77 | KM Plot |
KIRC | rs9467621 | chr6:25851338 | G/A | 6.36E-5 | 506 | 37.77 | 29.5 | 4.1 | KM Plot |
KIRC | rs9467622 | chr6:25854644 | C/A | 6.66E-5 | 505 | 37.77 | 29.5 | 4.1 | KM Plot |
KIRC | rs9467623 | chr6:25860580 | G/A | 2.96E-5 | 508 | 37.77 | 29.5 | 4.1 | KM Plot |